Advanced Guide

!!!! New location for ALICE wiki !!!!

The wiki of the ALICE HPC cluster has moved to a new location: https://pubappslu.atlassian.net/wiki/spaces/HPCWIKI/.

So far, there have been separate user wikis for ALICE HPC cluster and the SHARK HPC cluster at LUMC. However, there is a great deal of overlap in terms of information that you as a user need to work on ALICE or SHARK. Therefore, the support teams of both clusters have launched a new joined HPC user wiki. The new wiki provides information specific to each cluster in addition to a user guide and tutorials which apply to both clusters. There is also a news section, a calendar where we publish events, information about user meetings and workshops

This wiki is frozen and should no longer be use. If you encounter any issues, please contact the ALICE Helpdesk.

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Work in progress

• More in-depth
  • Security and privacy
  • More on login nodes
  • Using Node802
  • Running jobs
    • How to run jobs
    • Submit
    • Control, inspect
    • Kill, suspend
    • Interactive jobs
    • How jobs are scheduled (queries, prio)
    • Your first parallel job?
    • How to manage my data
    • Where to store which data
    • Environment variables
  • Other
    • References and further reading
    • Transferring data
• Software
  • Available software
    • Standard generic software
    • Software by discipline
    • Modules
    • New software
  • Develop your own code
    • Compilers, compiling
    • Checkpointing
    • Libraries, linking
  • Running in parallel
    • Parallel computing
    • Shared, OpenMP
    • Distrib, MPI
  • Software packages
    • Cuda on ALICE
    • FSL on ALICE
    • Python on ALICE
    • R on ALICE
    • MATLAB on ALICE